Selected publications (*equal contribution, #corresponding)
SCMBench: benchmarking domain-specific and foundation models for single-cell multi-omics data integration. Yixuan Wang, Yimin Fan, Xuesong Wang, Tingyang Yu, Yongshuo Zong, Xinyuan Liu, Gaoyang Zhong, Meitong Liu, Qing Li, Kin Hei Lee, Khachatur Dallakyan, Zhichao Hu, Yaqian Qi, Junjie Huang, Gengjie Jia, Jiao Yuan, Ting-Fung Chan, Xin Gao, Irwin King, Yu Li#. Nature Communications, 2026, https://doi.org/10.1038/s41467-026-72570-x. Full text
Progress and Opportunities of Foundation Models in Bioinformatics. Qing Li, Zhihang Hu, Yixuan Wang, Lei Li, Yimin Fan, Irwin King, Gengjie Jia, Sheng Wang, Le Song#, Yu Li#. Briefings in Bioinformatics, 25(6):bbae548, 2024. Full text
Developing ChatGPT for Biology and Medicine: A Complete Review of Biomedical Question Answering. Qing Li*, Lei Li*, Yu Li#. Biophysics Reports, 10(3):152-171, 2024. Full text
Multi-scale Global Consistency Residue Feature Enhancement based Protein Structure Analysis. Qing Li*, Bingqing Du*, Xiaolin Qin#, Jiguang Zhang, Shibiao Xu. Proceedings of the 2023 9th International Conference on Communication and Information Processing, Association for Computing Machinery, New York, NY, USA, 24–30, 2024. Full text
Adjusted Stochastic Gradient Descent for Latent Factor Analysis. Qing Li, Diwen Xiong, Mingsheng Shang#. Information Sciences, 588:196-213, 2022. Full text
An Efficient Annealing-Assisted Differential Evolution for Multi-parameter Adaptive Latent Factor Analysis. Qing Li, Guansong Pang, Mingsheng Shang#. Journal of Big Data, 9(1):95, 2022. Full text
BALFA: A Brain Storm Optimization-based Adaptive Latent Factor Analysis Model. Qing Li, Mingsheng Shang#. Information Sciences, 578:913-929, 2021. Full text
Chronic Disease Detection via Non-negative Latent Feature Analysis. Leming Zhou, Qing Li, Mingsheng Shang#. IEEE International Conference on Networking, Sensing and Control, 1:1-6, 2021. Full text
A Compressed Sensing and Porous 9-7 Wavelet Transform-based Image Fusion Algorithm. Qing Li, Mingsheng Shang#. 2020 IEEE International Conference on Systems, Man, and Cybernetics (SMC), 4185-4191, 2020. Full text
NSA-CSIPSO: satellite navigation signal acquisition method based on compressed sensing using improved particle swarm optimization. Qing Li, Lige Zhang, Xiaolin Qin#, Weiyi Chen. 2018 10th International Conference on Communication Software and Networks (ICCSN), 290-295, 2018. Full text